PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4395s0081.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YC
Protein Properties Length: 232aa    MW: 25615.7 Da    PI: 4.8822
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4395s0081.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.85.1e-56581611101
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fwe+q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaavtrtd
  Cagra.4395s0081.1.p  58 QLQAFWENQfkeIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTD 147
                          89******99999***************************************************************************** PP

                NF-YC  88 ifdflvdivprdel 101
                          ifdflvdivpr++l
  Cagra.4395s0081.1.p 148 IFDFLVDIVPREDL 161
                          ***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.04E-3235152IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.9E-3872144IPR009072Histone-fold
PfamPF008085.8E-2280143IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDQQEHGQSG AMNYGTNPYQ SNPMSTTAAT VAGGAAQQGQ LAFHQIHQQQ QQQQLAQQLQ  60
AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA CEMFILELTL  120
RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPDAAAA  180
GYPYGYLPAG TAPIGNPGMV MGNPGGTYPP NPYMGQPMWQ QQGPDQPDAE N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-415915819119HapE
4g92_C4e-415915819119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3168820.0AK316882.2 Arabidopsis thaliana AT1G08970 mRNA, complete cds, clone: RAFL14-04-L24.
GenBankAY0858600.0AY085860.1 Arabidopsis thaliana clone 1911 mRNA, complete sequence.
GenBankAY1269970.0AY126997.1 Arabidopsis thaliana At1g08970/F7G19_16 mRNA, complete cds.
GenBankAY1438270.0AY143827.1 Arabidopsis thaliana At1g08970/F7G19_16 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF7G190.0AC000106.1 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304170.11e-173hypothetical protein CARUB_v10010196mg
RefseqXP_006304171.11e-173hypothetical protein CARUB_v10010196mg
SwissprotQ8L4B21e-142NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLR0I4911e-173R0I491_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.1__929__AT1G08970.21e-147(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.46e-94nuclear factor Y, subunit C9